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Reto BurriDr.

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+41 41 462 97 21
reto.burri@vogelwarte.ch

Stazione ornitologica svizzera
Seerose 1
6204 Sempach
Svizzera

Funzioni

Responsabile Supporto scientifico

Settore

Supporto scientifico

Unità

Supporto scientifico

Reti

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Progetti

Ricerca ecologica

Genomica di ibridazione, speciazione ed evoluzione fenotipica nella monachella

Migrazione

Strategie migratorie: rotte e geni

Ricerca ecologica

Meccanismi della dinamica di popolazione del nibbio reale

Dettagli (in inglese)

CV

Employment
2022-present	Head of Scientific Support; Swiss Ornithological Institute, Sempach, Switzerland
2020-present	Deputy head of Science; Swiss Ornithological Institute, Sempach, Switzerland
2016-2020	Group Leader; Institute of Ecology and Evolution, Friedrich-Schiller-University Jena, Germany
2011-2016	Postdoctoral Fellow; Institute of Ecology and Genetics, Uppsala University, Sweden
Education
2005-2010	PhD Student and Teaching Assistant; Département d'Ecologie et Evolution, Université de Lausanne, Switzerland
2004-2005	Höheres Lehramt; University of Berne
2002-2004	MSc in Biology; Institute of Ecology and Evolution, University of Berne, Switzerland
1999-2002	Undergraduate Studies in Biology; University of Berne, Switzerland

FURTHER PUBLICATIONS

Full publication list (scholar.google.com)

Seasonal migration patterns and the maintenance of evolutionary diversity in a cryptic bird radiation

Tang Q., Burri R., Liu Y., Suh A., Gombobaatar S., Heckel G., Schweizer M. (2022)

Molecular Ecology, 31(2): 32-645

https://doi.org/10.1111/mec.16241

Evolution: Small populations, low recombination, big trouble?

Burri R. (2021)

Current Biology, 31(6):R282-R284

https://doi.org/10.1016/j.cub.2021.02.004

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise

Peona V., Blom M.P.K., Xu L., Burri R., Sullivan S., Bunikis I., Liachko I., Jønsson K., Zhou Q., Irestedt M., Suh A. (2021)

Molecular Ecology Resources, 21:263-286

https://doi.org/10.1111/1755-0998.13252

Linked-read sequencing enables haplotype-resolved resequencing at population scale

Lutgen D., Ritter R., Olsen R.A., Schielzeth H., Gruselius J., Ewels P.A., Garcia J.T., Shirihai H., Schweizer M., Suh A. & Burri R. (2021)

Molecular Ecology Resources, 20(5):1311-1322

https://doi.org/10.1111/1755-0998.13192

Avian MHC evolution in the era of genomics: Phase 1.0

O’Connor E., Westerdahl H., Burri R., Edwards S.V. (2019)

Cells, 8(10):1152

https://doi.org/10.3390/cells8101152

Lack of statistical power as a major limitation in understanding MHC-mediated immunocompetence in wild vertebrate populations

Gaigher A., Burri R., San-José Garcia L., Roulin A., Fumagalli L. (2020)

Molecular Ecology, 28(23):5115-5132

https://doi.org/10.1111/mec.15276

Genome-wide evidence supports mitochondrial relationships and pervasive parallel phenotypic evolution in open-habitat chats

Schweizer M., Warmuth V., Alaei Kakhki N., Aliabadian M., Förschler M., Shirihai H., Ewels P., Griselius J, Olsen RA, Schielzeth H, Suh A & Burri R. (2019)

Molecular Phylogenetics and Evolution, 139(10):106568

https://doi.org/10.1016/j.ympev.2019.106568

Parallel color evolution and introgressive hybridization in wheatears

Schweizer M., Warmuth V., Alaei N., Aliabadian M., Förschler M., Shirihai H., Suh A., Burri R. (2019)

Journal of Evolutionary Biology, 32 (1): 100-110

https://doi.org/10.1111/jeb.13401

Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers

Nadachowska-Brzyska K., Burri R., Ellegren H. (2019)

Molecular Ecology, 28(9):2290-2304

https://doi.org/10.1111/mec.15021

Success and failure in replication of genotype-phenotype associations: How does replication help in understanding the genetic basis of phenotypic variation in outbred populations?

Schielzeth H., Rios A., Burri R. (2018)

Molecular Ecology Resources, 18:739-754

https://doi.org/10.1111/1755-0998.12780

Lack of evidence for selection favouring MHC haplotypes that combine high functional diversity.

Gaigher A., Roulin A., Gharib W.H., Taberlet P., Burri R., Fumagalli L. (2018)

Heredity, 120(5):396-406

https://doi.org/10.1038/s41437-017-0047-9

Interpreting differentiation landscapes in the light of long-term linked selection

Burri R. (2017)

Evolution Letters, 1(3):118-131

https://doi.org/10.1002/evl3.14

Linked selection, demography, and the evolution of correlated genomic landscapes in birds and beyond

Burri R. (2017)

Molecular Ecology, 26(15):3853–3856

https://doi.org/10.1111/mec.14167

Dissecting differentiation landscapes: A linked selection’s perspective

Burri R. (2017)

Journal of Evolutionary Biology, 30:1501-1505

https://doi.org/10.1111/jeb.13108

100 million years of multigene family evolution: Origins and evolution of the avian MHC class IIB

Goebel J., Promerová M., Bonadonna F., McCoy K., Serbielle C., Strandh M., Yannic G., Burri R., Fumagalli L. (2017)

BMC Genomics, 18:460

https://doi.org/10.1186/s12864-017-3839-7

Whole-genome patterns of linkage disequilibrium in flycatcher genomes clarify the causes and consequences of fine-scale recombination rate variation in birds

Kawakami T., Mugal C.F., Suh A., Nater A., Burri R., Smeds L., Ellegren H. (2017)

Molecular Ecology, 26(16):4158-4172

https://doi.org/10.1111/mec.14197

Genome-wide signatures of genetic variation within and between populations – a comparative perspective

Vijay N., Weissensteiner M., Burri R., Kawakami T., Ellegren H., Wolf J. (2017)

Molecular Ecology, 26(16):4284-4295

https://doi.org/10.1111/mec.14195

Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting

Dutoit L., Vijay N., Mugal C.F., Bossu C.M., BURRI R., Wolf J., Ellegren H. (2017)

Proceedings of the Royal Society B, 284(1849), 20162756

https://doi.org/10.1098/rspb.2016.2756

No evidence for transmission ratio distortion in MHC class II in the Atlantic salmon Salmo salar

Promerová M., Alavioon G., Tusso S., Burri R., Immler S. (2017)

Heredity, 118:563-567

https://doi.org/10.1038/hdy.2016.129

Distribution and estimation of nucleotide diversity in the collared flycatcher (Ficedula albicollis) genome

Dutoit L., Burri R., Nater A., Mugal C.F., Ellegren H. (2017)

Molecular Ecology Resources, 17(4):586-597

https://doi.org/10.1098/rspb.2016.2756

Family-assisted inference of the genetic architecture of MHC variation

Gaigher A., Burri R., Gharib W.H., Taberlet P., Roulin A., Fumagalli L. (2016)

Molecular Ecology Resources, 16(6):1353-1364

https://doi.org/10.1111/1755-0998.12537

Divergence in gene expression within and between two closely related flycatcher species

Uebbing S., Künstner A., Mäkinen H., Backström N., Bolivar P., Burri R., Dutoit L., Mugal C.F., Nater A., Bronwen A., Flicek P., Martin F.J., Searle S.M.J., Ellegren H. (2016)

Molecular Ecology, 25(9):2015-2028

https://doi.org/10.1111/mec.13596

PSMC-analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers

Nadachowska-Brzyska K., Burri R., Smeds L., Ellegren H. (2016)

Molecular Ecology, 25(5):1058-1072

https://doi.org/10.1111/mec.13540

The genetic basis of color adaptation in a ring-like colonization around the Mediterranean

Burri R., Antoniazza S., Gaigher A., Ducrest A., Simon C., The European Barn Owl Network, Fumagalli L., Goudet J., Roulin A. (2016)

Evolution, 70(1):140-153

https://doi.org/10.1111/evo.12824

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum in Ficedula flycatchers

Burri R., Nater A, Kawakami T., Mugal C.F., Olason P.I., Smeds L., Suh A., Dutoit L., Bureš S., Garamszegi L.Z., Hogner S., Moreno J., Qvarnström A., Ružic M., Sæther S.A., Sætre G.P., Török J., Ellegren H. (2015)

Genome Research, 25(11):1656-1665

https://doi.org/10.1101/gr.196485.115

Resolving evolutionary relationships in closely related species with whole genome sequencing data

Nater A., Burri R., Kawakami T., Smeds L., Ellegren H. (2015)

Systematic Biology, 64(6):1000-1017

https://doi.org/10.1093/sysbio/syv045

Evolutionary analysis of the female-specific avian W chromosome

Smeds L., Warmuth V., Bolivar P., Uebbing S., Burri R., Suh A., Bureš S., Garamszegi L.Z., Hogner S., Moreno J., Qvarnström A., Ružic M., Sæther S.A., Sætre G.P., Török J., Ellegren H. (2015)

Nature Communications, 6:7330

https://doi.org/10.1038/ncomms8330

Natural selection in a post-glacial range expansion: the case of the color cline in the European barn owl

Antoniazza S., Kanitz R., Neuenschwander S., Burri R., Gaigher A., Roulin A., Goudet J. (2014)

Molecular Ecology, 23(22):5508-5523

https://doi.org/10.1111/mec.12957

Genomic identification and characterization of the pseudoautosomal region in a highly differentiated avian sex chromosome

Smeds L., Kawakami T., Burri R., Bolivar Balbas P., Husby A., Qvarnström A., Uebbing S., Ellegren H. (2014)

Nature Communications, 5:5448

https://doi.org/10.1038/ncomms6448

Estimation of linkage disequilibrium and gene flow in Ficedula flycatchers by a newly developed 50k SNP array

Kawakami T., Backström N., Burri R., Husby A., Rice A., Alund M., Qvarnström A., Ellegren H. (2014)

Molecular Ecology Resources, 14, 1248-1260

https://doi.org/10.1111/1755-0998.12270

PCR-based isolation of multigene families: Lessons from the avian MHCIIB

Burri R., Promerová M., Goebel J., Fumagalli L. (2014)

Molecular Ecology Resources, 14(4):778-788

https://doi.org/10.1111/1755-0998.12234

Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data

Nadachowska-Brzyska K., Burri R., Olason P.I., Kawakami T., Smeds L., Ellegren H. (2013)

PLoS Genetics, 9(11):e1003942

https://doi.org/10.1371/journal.pgen.1003942

The genomic landscape of species divergence in Ficedula flycatchers

Ellegren H., Smeds L., Burri R., Olason P.I., Backström N., Kawakami T., Künstner A., Mäkinen H., Nadachowska-Brzyska K., Qvarnström A., Uebbing S., Wolf J. (2012)

Nature 491(7426):756-760

https://doi.org/10.1038/nature11584

Systematics of snow voles (genus Chionomys, Arvicolinae) revisited

Yannic G., Burri R., Malikov V.G., Vogel P. (2012)

Molecular Phylogenetics and Evolution, 62(3):806-815.

https://doi.org/10.1016/j.ympev.2011.12.004

Multiple paternity in polyandrous barn owls (Tyto alba)

Henry I., Antoniazza S., Dubey S., Simon C., Burri R., Roulin A. (2013)

PLoS ONE, 8 (11):e80112

https://doi.org/10.1371/journal.pone.0080112

Combining molecular evolution and environmental genomics to unravel adaptive processes of MHC class IIB diversity in European minnows (Phoxinus phoxinus)

Collin H., Burri R., Comptesse F., Fumagalli L. (2013)

Ecology and Evolution, 3 (8), 2568-2585

https://doi.org/10.1002/ece3.650

Local adaptation and matching habitat choice in female barn owls with respect to melanic coloration

Dreiss A., Antoniazza S., Burri R., Fumagalli L., Sonnay C., Frey C., Goudet J., Roulin A. (2012)

Journal of Evolutionary Biology, 25(1), 103-114

https://doi.org/10.1111/j.1420-9101.2011.02407.x

Spatial variation in the temporal change of male and female melanic ornamentation in the barn owl

Roulin A., Antoniazza S., Burri R. (2011)

Journal of Evolutionary Biology, 24(7), 1403-1409

https://doi.org/10.1111/j.1420-9101.2011.02272.x

Eumelanin-based coloration and fitness parameters in birds: a meta-analysis

Meunier J., Figueiredo Pinto S., Burri R., Roulin A. (2011)

Behavioural Ecology and Sociobiology, 65(4):559-567

https://doi.org/10.1007/s00265-010-1092-z

Owl melanin-based plumage redness is more frequent near than away from the equator: implications on the effect of global warming and biodiversity

Roulin A., Burri R., Antoniazza S. (2011)

Biological Journal of the Linnean Society, 102(3):573-582

https://doi.org/10.1111/j.1095-8312.2010.01614.x

Adaptive divergence of ancient gene duplicates in the avian MHC class II B

Burri R., Salamin N., Studer R.A., Roulin A., Fumagalli L. (2010)

Molecular Biology and Evolution, 27(10):2360-2374

https://doi.org/10.1093/molbev/msq120

Local adaptation maintains clinal variation in melanin-based coloration of European barn owls (Tyto alba)

Antoniazza S., Burri R., Fumagalli L., Goudet J., Roulin A. (2010)

Evolution, 64(7):1944-1954.

https://doi.org/10.1111/j.1558-5646.2010.00969.x

Evolutionary patterns of MHC class II B in owls and their implications for the under-standing of avian MHC evolution

Burri R., Niculita-Hirzel H., Salamin N., Roulin A., Fumagalli L. (2008)

Molecular Biology and Evolution, 25(6):1180-1191

https://doi.org/10.1093/molbev/msn065

Isolation and characterization of major histocompatibility complex (MHC) class II B genes in the Barn owl (Aves: Tyto alba)

Burri R., Niculita-Hirzel H., Roulin A., Fumagalli L. (2008)

Immunogenetics, 60(9):543-550

https://doi.org/10.1007/s00251-008-0308-0

Isolation and characterization of 21 microsatellite markers in the Barn Owl (Tyto alba)

Burri R., Antoniazza S., Siverio F., Klein A., Roulin A., Fumagalli L. (2008)

Molecular Ecology Resources, 8(5):977-979

https://doi.org/10.1111/j.1755-0998.2008.02121.x

Cichlids do not adjust reproductive skew to the availability of independent breeding options

Heg D., Bergmüller R., Bonfils D., Otti O., Bachar Z., Burri R., Heckel G., Taborsky M. (2006)

Behavioral Ecology, 17(3):419-429

https://doi.org/10.1093/beheco/arj056

Genetic structure and colonization processes in European populations of the common vole, Microtus arvalis

Heckel G., Burri R., Fink S., Desmet J.F., Excoffier L. (2005)

Evolution, 59(10):2231-2242

https://doi.org/10.1111/j.0014-3820.2005.tb00931.x

FURTHER INFORMATION

Grants

2022/07 – 2025/06: Hybridization-induced escalation of TE-related genomic conflict: Source of structural variation and integral component of reproductive isolation? Research Grant, Swiss National Science Foundation (SNSF). Principle Investigator. CHF 575’300.-

2020/11 – 2021/10: Systematics and molecular bases of speciation and plumage coloration in the Oenanthe picata complex. Co-PI with Dr. M. Schweizer, NMBE. Basler Stiftung für biologische Forschung. Co-PI. CHF 12’000.-

2018/08 – 2021/07: Genomics of hybridization, speciation, and phenotype evolution in wheatears. Research Grant, German Research Foundation (DFG). Principle Investigator. EUR 370’000.-

2019/08 – 2021/07: Reconstructing the phylogenetic relationships and origins of color polymorphisms in the Oenanthe hispanica-pleschanka-cypriaca complex. Host. Research cost subsidy, Georg Forster Stipend of the Alexander von Humboldt Foundation towards Dr. Niloofar Alaei Kakhki. EUR 19’000.-

2010/07: Travel grant, EMBO course “Computational molecular evolution”, Crete (Greece), Swiss Society of Zoology, CHF 700.-

2010/06-2010/09: Evolutionary history of the avian MHCIIB. Research grant, Société Académique Vaudoise (SAV); CHF 8’000.-

Host to PhD and Postdoc Grants:

2023/07 – 2026/06: Transposable elements as a source of structural rearrangements, genetic conflicts and constraints to gene flow. International Postdoc Grant to Dr. Valentina Peona, Vetenskapsrådet (VR) Sweden. SEK 1’200’000.-

2020/12 – 2023/11: Genomics of hybridization, speciation and phenotypic evolution in a color polymorphic songbird radiation. PhD grant to Dave Lutgen, Fond National de la Recherche (FRN) Luxembourg. Ca. EUR 180’000.-

2019/08 – 2021/10: Reconstructing the phylogenetic relationships and origins of color polymorphism in the Oenanthe hispanica-pleschanka-cypriaca complex. Georg Foster Stipendium to Dr. Niloofar Alaei Kakhki, Alexander von Humboldt Stiftung. Ca. EUR 84’000.-

Supervision of Junior Researchers

2023/06 – : Dr. Madeline Chase, Swiss Ornithological Institute

2023/04 – : Dr. Fritjof Lammers, postdoc, Swiss Ornithological Institute

2023/01 – : Dr. Valentina Peona, Swiss Ornithological Institute

2019/07 – : PhD supervisor, Dave Lutgen, Friedrich Schiller University Jena, Germany. “Genomics of hybridization, speciation, and phenotype evolution in wheatears”

2019/11 – 2020/10: Laura Pabon Viteri, MSc student, Friedrich Schiller University Jena

2019/11 – 2020/10: Lisa Deak, MSc student, Friedrich Schiller University Jena

2019/06 – 2021/05: Dr. Niloofar Alaei, postdoc, Friedrich Schiller University Jena, Germany. “Reconstructing the phylogenetic relationships and origins of color polymorphisms in the Oenanthe hispanica-pleschanka-cypriaca complex”

2019/06 – 2020/05: Nicolas Auchli, MSc student, University of Bern, Switzerland. “Genomic landscapes of structural variation in wheatears”

2018/06 – 2019/05: Raphael Ritter, MSc student, Friedrich Schiller University Jena, Germany. “Genomic landscapes of diversity and gene tree variation in wheatears”

2012/03 – 2017/09: Arnaud Gaigher, external PhD advisor, University of Lausanne, Switzerland. “MHC evolutionary ecology in European barn owls (Tyto alba)”

2012/06 – 2016/08: Julien Goebel, PhD co-supervisor, University of Lausanne, Switzerland. “Evolutionary origin of the avian MHC class IIB”

2007/10 – 2008/10: Sylvain Antoniazza, MSc student, University of Lausanne, Switzerland. “Local adaptation of pheomelanin-based coloration in the European barn owl”

2007/10 – 2008/10: Karim Ghali, MSc student, University of Lausanne, Switzerland. “MHC class IIB evolution in barn owl”

Scientific Reviewing Activities

– 168 peer reviews for 41 journals, incl. Current Biology, Evolution, Evolution Letters, Genome Research, Journal of Evolutionary Biology, Molecular Biology and Evolution, Molecular Ecology, Molecular Ecology Resources, Nature Communications, PLoS Biology, PLoS Genetics, PNAS, Science.

– Reviewer awards: Publons Peer Review Award 2017, Top 1% peer reviewers in Agricultural and Biological Sciences; Top Reviewer for Molecular Ecology 2012, 2014

– Reviewing Editor, Journal of Evolutionary Biology, 2014-2017

– Grant reviews and evaluation committees: German Research Foundation (DFG); Biotechnology and Biological Sciences Research Council (BBSRC), UK. Natural Environment Research Council (NERC), UK; National Science Centre, Poland; Evaluator research activities of the Institutes of the Czech Acad of Sci.

– Thesis committees: Thesis committee Ana Paula Machado, University of Lausanne. Mid-thesis committee Catalina Palacios, University of the Andes, Bogota. PhD committee Marlene Haider, University of Innsbruck.

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Come monitoriamo gli uccelli ed esploriamo l’avifauna

Monitoriamo gli effettivi di tutte le specie di uccelli della Svizzera e il loro sviluppo, studiamo lo stile di vita e le esigenze delle specie di uccelli in via di estinzione ed esploriamo la migrazione degli uccelli.

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Ricerca frequente

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Reto BurriDr.

Contatto

Funzioni

Settore

Unità

Reti

Progetti

Dettagli (in inglese)

EXPERTISE

CV

Employment

Education

FURTHER PUBLICATIONS

FURTHER INFORMATION

CO-OPERATIONS

Come monitoriamo gli uccelli ed esploriamo l’avifauna